es_sfgtools.modeling.garpos_tools.schemas module

class es_sfgtools.modeling.garpos_tools.schemas.GPATDOffset(*, forward: float, rightward: float, downward: float)

Bases: BaseModel

downward: float

forward: float

get_offset() → List[float]

model_computed_fields: ClassVar[dict[str, ComputedFieldInfo]] = {}

A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

model_config: ClassVar[ConfigDict] = {}

Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

model_fields: ClassVar[dict[str, FieldInfo]] = {'downward': FieldInfo(annotation=float, required=True), 'forward': FieldInfo(annotation=float, required=True), 'rightward': FieldInfo(annotation=float, required=True)}

Metadata about the fields defined on the model, mapping of field names to [FieldInfo][pydantic.fields.FieldInfo].

This replaces Model.__fields__ from Pydantic V1.

rightward: float

class es_sfgtools.modeling.garpos_tools.schemas.GPPositionENU(*, east: float | None = 0, north: float | None = 0, up: float | None = 0, east_sigma: float | None = 0, north_sigma: float | None = 0, up_sigma: float | None = 0, cov_nu: float | None = 0, cov_ue: float | None = 0, cov_en: float | None = 0)

Bases: BaseModel

cov_en: float | None

cov_nu: float | None

cov_ue: float | None

east: float | None

east_sigma: float | None

get_covariance() → ndarray

get_position() → List[float]

get_std_dev() → List[float]

model_computed_fields: ClassVar[dict[str, ComputedFieldInfo]] = {}

A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

model_config: ClassVar[ConfigDict] = {}

Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

model_fields: ClassVar[dict[str, FieldInfo]] = {'cov_en': FieldInfo(annotation=Union[float, NoneType], required=False, default=0), 'cov_nu': FieldInfo(annotation=Union[float, NoneType], required=False, default=0), 'cov_ue': FieldInfo(annotation=Union[float, NoneType], required=False, default=0), 'east': FieldInfo(annotation=Union[float, NoneType], required=False, default=0), 'east_sigma': FieldInfo(annotation=Union[float, NoneType], required=False, default=0), 'north': FieldInfo(annotation=Union[float, NoneType], required=False, default=0), 'north_sigma': FieldInfo(annotation=Union[float, NoneType], required=False, default=0), 'up': FieldInfo(annotation=Union[float, NoneType], required=False, default=0), 'up_sigma': FieldInfo(annotation=Union[float, NoneType], required=False, default=0)}

Metadata about the fields defined on the model, mapping of field names to [FieldInfo][pydantic.fields.FieldInfo].

This replaces Model.__fields__ from Pydantic V1.

north: float | None

north_sigma: float | None

up: float | None

up_sigma: float | None

class es_sfgtools.modeling.garpos_tools.schemas.GPPositionLLH(*, latitude: float, longitude: float, height: float | None = 0)

Bases: BaseModel

height: float | None

latitude: float

longitude: float

model_computed_fields: ClassVar[dict[str, ComputedFieldInfo]] = {}

A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

model_config: ClassVar[ConfigDict] = {}

Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

model_fields: ClassVar[dict[str, FieldInfo]] = {'height': FieldInfo(annotation=Union[float, NoneType], required=False, default=0), 'latitude': FieldInfo(annotation=float, required=True), 'longitude': FieldInfo(annotation=float, required=True)}

Metadata about the fields defined on the model, mapping of field names to [FieldInfo][pydantic.fields.FieldInfo].

This replaces Model.__fields__ from Pydantic V1.

class es_sfgtools.modeling.garpos_tools.schemas.GPTransponder(*, position_llh: GPPositionLLH | None = None, position_enu: GPPositionENU | None = None, tat_offset: float | None = None, name: str | None = None, id: str | None = None, delta_center_position: GPPositionENU | None = None)

Bases: BaseModel

class Config

Bases: object

populate_by_name = True

delta_center_position: GPPositionENU | None

id: str | None

model_computed_fields: ClassVar[dict[str, ComputedFieldInfo]] = {}

A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

model_config: ClassVar[ConfigDict] = {'populate_by_name': True}

Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

model_fields: ClassVar[dict[str, FieldInfo]] = {'delta_center_position': FieldInfo(annotation=Union[GPPositionENU, NoneType], required=False, default=None), 'id': FieldInfo(annotation=Union[str, NoneType], required=False, default=None, alias=AliasChoices(choices=['id', 'address']), alias_priority=2), 'name': FieldInfo(annotation=Union[str, NoneType], required=False, default=None), 'position_enu': FieldInfo(annotation=Union[GPPositionENU, NoneType], required=False, default=None), 'position_llh': FieldInfo(annotation=Union[GPPositionLLH, NoneType], required=False, default=None), 'tat_offset': FieldInfo(annotation=Union[float, NoneType], required=False, default=None)}

Metadata about the fields defined on the model, mapping of field names to [FieldInfo][pydantic.fields.FieldInfo].

This replaces Model.__fields__ from Pydantic V1.

name: str | None

position_enu: GPPositionENU | None

position_llh: GPPositionLLH | None

tat_offset: float | None

class es_sfgtools.modeling.garpos_tools.schemas.GarposFixed(*, lib_directory: str = PosixPath('/home/docs/checkouts/readthedocs.org/user_builds/es-sfgtools/conda/document-update/lib/python3.11/site-packages/garpos/garpos_v102/f90lib'), lib_raytrace: str = 'lib_raytrace.so', inversion_params: ~es_sfgtools.modeling.garpos_tools.schemas.InversionParams = InversionParams(spline_degree=3, log_lambda=[0], log_gradlambda=-1, mu_t=[0.0], mu_mt=[0.5], knotint0=5, knotint1=0, knotint2=0, rejectcriteria=2, inversiontype=<InversionType.positions: 0>, positionalOffset=[0.0, 0.0, 0.0], traveltimescale=0.0001, maxloop=50, convcriteria=0.005, deltap=1e-06, deltab=1e-06, delta_center_position=GPPositionENU(east=0, north=0, up=0, east_sigma=1.0, north_sigma=1.0, up_sigma=1.0, cov_nu=0, cov_ue=0, cov_en=0)))

Bases: BaseModel

classmethod from_datafile(path: Path) → GarposFixed

inversion_params: InversionParams

lib_directory: str

lib_raytrace: str

model_computed_fields: ClassVar[dict[str, ComputedFieldInfo]] = {}

A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

model_config: ClassVar[ConfigDict] = {}

Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

model_fields: ClassVar[dict[str, FieldInfo]] = {'inversion_params': FieldInfo(annotation=InversionParams, required=False, default=InversionParams(spline_degree=3, log_lambda=[0], log_gradlambda=-1, mu_t=[0.0], mu_mt=[0.5], knotint0=5, knotint1=0, knotint2=0, rejectcriteria=2, inversiontype=<InversionType.positions: 0>, positionalOffset=[0.0, 0.0, 0.0], traveltimescale=0.0001, maxloop=50, convcriteria=0.005, deltap=1e-06, deltab=1e-06, delta_center_position=GPPositionENU(east=0, north=0, up=0, east_sigma=1.0, north_sigma=1.0, up_sigma=1.0, cov_nu=0, cov_ue=0, cov_en=0))), 'lib_directory': FieldInfo(annotation=str, required=False, default=PosixPath('/home/docs/checkouts/readthedocs.org/user_builds/es-sfgtools/conda/document-update/lib/python3.11/site-packages/garpos/garpos_v102/f90lib')), 'lib_raytrace': FieldInfo(annotation=str, required=False, default='lib_raytrace.so')}

Metadata about the fields defined on the model, mapping of field names to [FieldInfo][pydantic.fields.FieldInfo].

This replaces Model.__fields__ from Pydantic V1.

class es_sfgtools.modeling.garpos_tools.schemas.GarposInput(*, site_name: str, campaign_id: str, survey_id: str, site_center_llh: GPPositionLLH, array_center_enu: GPPositionENU, transponders: List[GPTransponder], sound_speed_data: Path | str | None, atd_offset: GPATDOffset, start_date: datetime, end_date: datetime, shot_data: Path | str | None, delta_center_position: GPPositionENU = GPPositionENU(east=0, north=0, up=0, east_sigma=0, north_sigma=0, up_sigma=0, cov_nu=0, cov_ue=0, cov_en=0), ref_frame: str = 'ITRF', n_shot: int)

Bases: BaseModel

array_center_enu: GPPositionENU

atd_offset: GPATDOffset

campaign_id: str

delta_center_position: GPPositionENU

dt_to_str(value)

end_date: datetime

classmethod from_datafile(path: Path, survey_id: str = None) → GarposInput

model_computed_fields: ClassVar[dict[str, ComputedFieldInfo]] = {}

A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

model_config: ClassVar[ConfigDict] = {}

Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

model_fields: ClassVar[dict[str, FieldInfo]] = {'array_center_enu': FieldInfo(annotation=GPPositionENU, required=True), 'atd_offset': FieldInfo(annotation=GPATDOffset, required=True), 'campaign_id': FieldInfo(annotation=str, required=True), 'delta_center_position': FieldInfo(annotation=GPPositionENU, required=False, default=GPPositionENU(east=0, north=0, up=0, east_sigma=0, north_sigma=0, up_sigma=0, cov_nu=0, cov_ue=0, cov_en=0)), 'end_date': FieldInfo(annotation=datetime, required=True), 'n_shot': FieldInfo(annotation=int, required=True), 'ref_frame': FieldInfo(annotation=str, required=False, default='ITRF'), 'shot_data': FieldInfo(annotation=Union[Path, str, NoneType], required=True), 'site_center_llh': FieldInfo(annotation=GPPositionLLH, required=True), 'site_name': FieldInfo(annotation=str, required=True), 'sound_speed_data': FieldInfo(annotation=Union[Path, str, NoneType], required=True), 'start_date': FieldInfo(annotation=datetime, required=True), 'survey_id': FieldInfo(annotation=str, required=True), 'transponders': FieldInfo(annotation=List[GPTransponder], required=True)}

Metadata about the fields defined on the model, mapping of field names to [FieldInfo][pydantic.fields.FieldInfo].

This replaces Model.__fields__ from Pydantic V1.

n_shot: int

path_to_str(value)

ref_frame: str

shot_data: Path | str | None

site_center_llh: GPPositionLLH

site_name: str

sound_speed_data: Path | str | None

start_date: datetime

survey_id: str

to_datafile(path: Path) → None

Write a GarposInput to a datafile

Parameters:

• garpos_input (GarposInput) – The GarposInput object

• path (Path) – The path to the datafile

Returns:

None

transponders: List[GPTransponder]

class es_sfgtools.modeling.garpos_tools.schemas.GarposObservationOutput(*args, **kwargs)

Bases: DataFrameModel

class Config

Bases: object

add_missing_columns = True

coerce = True

name = 'GarposObservationOutput'

LogResidual: Series[float] = 'LogResidual'

MT: Series[str] = 'MT'

RT: Series[float] = 'RT'

ResiRange: Series[float] = 'ResiRange'

ResiTT: Series[float] = 'ResiTT'

ST: Series[float] = 'ST'

TT: Series[float] = 'TT'

TakeOff: Series[float] = 'TakeOff'

dV: Series[float] = 'dV'

dVO: Series[float] = 'dVO'

flag: Series[bool] = 'flag'

gamma: Series[float] = 'gamma'

gradV1e: Series[float] = 'gradV1e'

gradV1n: Series[float] = 'gradV1n'

gradV2e: Series[float] = 'gradV2e'

gradV2n: Series[float] = 'gradV2n'

head1: Series[float] = 'head1'

class es_sfgtools.modeling.garpos_tools.schemas.InversionLoop(*, iteration: int, rms_tt: float, used_shot_percentage: float, reject: int, max_dx: float, hgt: float, inv_type: InversionType)

Bases: BaseModel

hgt: float

inv_type: InversionType

iteration: int

max_dx: float

model_computed_fields: ClassVar[dict[str, ComputedFieldInfo]] = {}

A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

model_config: ClassVar[ConfigDict] = {}

Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

model_fields: ClassVar[dict[str, FieldInfo]] = {'hgt': FieldInfo(annotation=float, required=True), 'inv_type': FieldInfo(annotation=InversionType, required=True), 'iteration': FieldInfo(annotation=int, required=True), 'max_dx': FieldInfo(annotation=float, required=True), 'reject': FieldInfo(annotation=int, required=True), 'rms_tt': FieldInfo(annotation=float, required=True), 'used_shot_percentage': FieldInfo(annotation=float, required=True)}

Metadata about the fields defined on the model, mapping of field names to [FieldInfo][pydantic.fields.FieldInfo].

This replaces Model.__fields__ from Pydantic V1.

reject: int

rms_tt: float

used_shot_percentage: float

class es_sfgtools.modeling.garpos_tools.schemas.InversionParams(*, spline_degree: int = 3, log_lambda: List[float] = [0], log_gradlambda: float = -1, mu_t: List[float] = [0.0], mu_mt: List[float] = [0.5], knotint0: int = 5, knotint1: int = 0, knotint2: int = 0, rejectcriteria: float = 2, inversiontype: InversionType = InversionType.positions, positionalOffset: List[float] | None = [0.0, 0.0, 0.0], traveltimescale: float = 0.0001, maxloop: int = 50, convcriteria: float = 0.005, deltap: float = 1e-06, deltab: float = 1e-06, delta_center_position: GPPositionENU = GPPositionENU(east=0, north=0, up=0, east_sigma=1.0, north_sigma=1.0, up_sigma=1.0, cov_nu=0, cov_ue=0, cov_en=0))

Bases: BaseModel

class Config

Bases: object

coerce = True

convcriteria: float

delta_center_position: GPPositionENU

deltab: float

deltap: float

inversiontype: InversionType

knotint0: int

knotint1: int

knotint2: int

log_gradlambda: float

log_lambda: List[float]

maxloop: int

model_computed_fields: ClassVar[dict[str, ComputedFieldInfo]] = {}

A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

model_config: ClassVar[ConfigDict] = {'coerce': True}

Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

model_fields: ClassVar[dict[str, FieldInfo]] = {'convcriteria': FieldInfo(annotation=float, required=False, default=0.005, description='Convergence criteria for model parameters'), 'delta_center_position': FieldInfo(annotation=GPPositionENU, required=False, default=GPPositionENU(east=0, north=0, up=0, east_sigma=1.0, north_sigma=1.0, up_sigma=1.0, cov_nu=0, cov_ue=0, cov_en=0), description='Delta center position'), 'deltab': FieldInfo(annotation=float, required=False, default=1e-06, description='Infinitesimal values to make Jacobian matrix'), 'deltap': FieldInfo(annotation=float, required=False, default=1e-06, description='Infinitesimal values to make Jacobian matrix'), 'inversiontype': FieldInfo(annotation=InversionType, required=False, default=<InversionType.positions: 0>, description='Inversion type'), 'knotint0': FieldInfo(annotation=int, required=False, default=5, description="Typical Knot interval (in min.) for gamma's component (a0, a1, a2)"), 'knotint1': FieldInfo(annotation=int, required=False, default=0, description="Typical Knot interval (in min.) for gamma's component (a0, a1, a2)"), 'knotint2': FieldInfo(annotation=int, required=False, default=0, description="Typical Knot interval (in min.) for gamma's component (a0, a1, a2)"), 'log_gradlambda': FieldInfo(annotation=float, required=False, default=-1, description='Smoothness paramter for spatial gradient'), 'log_lambda': FieldInfo(annotation=List[float], required=False, default=[0], description='Smoothness parameter for backgroun perturbation'), 'maxloop': FieldInfo(annotation=int, required=False, default=50, description='Maximum loop for iteration'), 'mu_mt': FieldInfo(annotation=List[float], required=False, default=[0.5], description='Data correlation coefficient b/w the different transponders'), 'mu_t': FieldInfo(annotation=List[float], required=False, default=[0.0], description='Correlation length of data for transmit time [minute]'), 'positionalOffset': FieldInfo(annotation=Union[List[float], NoneType], required=False, default=[0.0, 0.0, 0.0], description='Positional offset for the inversion'), 'rejectcriteria': FieldInfo(annotation=float, required=False, default=2, description='Criteria for the rejection of data (+/- rsig * Sigma)'), 'spline_degree': FieldInfo(annotation=int, required=False, default=3), 'traveltimescale': FieldInfo(annotation=float, required=False, default=0.0001, description='Typical measurement error for travel time (= 1.e-4 sec is recommended in 10 kHz carrier)')}

Metadata about the fields defined on the model, mapping of field names to [FieldInfo][pydantic.fields.FieldInfo].

This replaces Model.__fields__ from Pydantic V1.

mu_mt: List[float]

mu_t: List[float]

positionalOffset: List[float] | None

rejectcriteria: float

show_params() → None

spline_degree: int

traveltimescale: float

classmethod validate(values)

class es_sfgtools.modeling.garpos_tools.schemas.InversionResults(*, ABIC: float, misfit: float, inv_type: InversionType, lambda_0_squared: float, grad_lambda_squared: float, mu_t: float, mu_mt: float, delta_center_position: List[float], loop_data: List[InversionLoop])

Bases: BaseModel

ABIC: float

delta_center_position: List[float]

classmethod from_dat_file(file_path: str) → InversionResults

Parse the inversion results from a .dat file

Parameters:

file_path (str) – Path to the .dat file

Returns:

Inversion results

Return type:

InversionResults (obj)

grad_lambda_squared: float

inv_type: InversionType

lambda_0_squared: float

loop_data: List[InversionLoop]

misfit: float

model_computed_fields: ClassVar[dict[str, ComputedFieldInfo]] = {}

A dictionary of computed field names and their corresponding ComputedFieldInfo objects.

model_config: ClassVar[ConfigDict] = {}

Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

model_fields: ClassVar[dict[str, FieldInfo]] = {'ABIC': FieldInfo(annotation=float, required=True), 'delta_center_position': FieldInfo(annotation=List[float], required=True), 'grad_lambda_squared': FieldInfo(annotation=float, required=True), 'inv_type': FieldInfo(annotation=InversionType, required=True), 'lambda_0_squared': FieldInfo(annotation=float, required=True), 'loop_data': FieldInfo(annotation=List[InversionLoop], required=True), 'misfit': FieldInfo(annotation=float, required=True), 'mu_mt': FieldInfo(annotation=float, required=True), 'mu_t': FieldInfo(annotation=float, required=True)}

Metadata about the fields defined on the model, mapping of field names to [FieldInfo][pydantic.fields.FieldInfo].

This replaces Model.__fields__ from Pydantic V1.

mu_mt: float

mu_t: float

class es_sfgtools.modeling.garpos_tools.schemas.InversionType(value)

Bases: Enum

both = 2

gammas = 1

positions = 0

class es_sfgtools.modeling.garpos_tools.schemas.ObservationData(*args, **kwargs)

Bases: DataFrameModel

Observation data file schema

Example data:

,SET,LN,MT,TT,ResiTT,TakeOff,gamma,flag,ST,ant_e0,ant_n0,ant_u0,head0,pitch0,roll0,RT,ant_e1,ant_n1,ant_u1,head1,pitch1,roll1 0,S01,L01,M11,2.289306,0.0,0.0,0.0,False,30072.395125,-27.85291,1473.14423,14.73469,176.47,0.59,-1.39,30075.74594,-26.70998,1462.01803,14.32703,177.07,-0.5,-1.1 1,S01,L01,M13,3.12669,0.0,0.0,0.0,False,30092.395725,-22.08296,1412.88729,14.59827,188.24,0.41,-2.13,30096.58392,-22.3514,1401.77938,14.65401,190.61,-0.1,-2.14 2,S01,L01,M14,2.702555,0.0,0.0,0.0,False,30093.48579,-22.25377,1409.87685,14.67772,188.93,0.15,-1.7,30097.24985,-22.38458,1399.96509,14.55534,190.82,-0.39,-2.21 3,S01,L01,M14,2.68107,0.0,0.0,0.0,False,30102.396135,-23.25514,1387.38992,14.75355,192.39,0.1,-1.79,30106.13871,-23.96613,1378.4627,14.58135,192.92,0.21,-1.7 4,S01,L01,M11,2.218846,0.0,0.0,0.0,False,30103.4862,-23.57701,1384.73242,14.65861,192.62,-0.14,-1.5,30106.766555,-24.0478,1377.09283,14.68464,193.04,0.59,-1.81

class Config

Bases: object

add_missing_columns = True

coerce = True

name = 'ObservationData'

LN: Series[str] = 'LN'

MT: Series[str] = 'MT'

RT: Series[float] = 'RT'

ResiTT: Series[float] | None = 'ResiTT'

SET: Series[str] = 'SET'

ST: Series[float] = 'ST'

TT: Series[float] = 'TT'

TakeOff: Series[float] | None = 'TakeOff'

ant_e0: Series[float] = 'ant_e0'

ant_e1: Series[float] = 'ant_e1'

ant_n0: Series[float] = 'ant_n0'

ant_n1: Series[float] = 'ant_n1'

ant_u0: Series[float] = 'ant_u0'

ant_u1: Series[float] = 'ant_u1'

flag: Series[bool] = 'flag'

gamma: Series[float] = 'gamma'

head0: Series[float] = 'head0'

head1: Series[float] = 'head1'

latitude: Series[float] | None = 'lat'

longitude: Series[float] | None = 'lon'

pitch0: Series[float] = 'pitch0'

pitch1: Series[float] = 'pitch1'

roll0: Series[float] = 'roll0'

roll1: Series[float] = 'roll1'